Package index

Preprocess counts

cuda_normalize_counts()

Normalize a single-cell count matrix

cuda_hvg()

Select highly variable features

Reduce dimensions and find neighbours

cuda_cell_pca()

Run PCA on highly variable single-cell features

cuda_cell_neighbors()

Construct a nearest-neighbour representation

End-to-end workflows

cudacell_workflow()

Run the initial cudacellr workflow

SingleCellExperiment integration

cudacell_sce()

Run a cudacell workflow on a SingleCellExperiment

SeuratObject v5 integration

cudacell_seurat()

Run a cudacell workflow on a Seurat object

Provenance

reexports cuda_provenance

Objects exported from other packages

cuda_provenance(<SingleCellExperiment>) cuda_provenance(<Seurat>)

Inspect provenance stored on native single-cell containers